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1

Double-Stranded RNA Resists Condensation

Li, Li, Pabit, Suzette, Meisburger, Steve, Pollack, Lois

Journal:

Physical Review Letters

Year:

2011

Language:

english

File:

PDF, 195 KB

english, 2011

2

Ionic strength-dependent persistence lengths of single-stranded RNA and DNA

Chen, H., Meisburger, S. P., Pabit, S. A., Sutton, J. L., Webb, W. W., Pollack, L.

Journal:

Proceedings of the National Academy of Sciences

Year:

2012

Language:

english

File:

PDF, 574 KB

english, 2012

3

Light harvesting antenna on an amyloid scaffold

Liang, Yan, Guo, Peng, Pingali, Sai Venkatesh, Pabit, Suzette, Thiyagarajan, Pappannan, Berland, Keith M., Lynn, David G.

Journal:

Chemical Communications

Year:

2008

Language:

english

File:

PDF, 1.03 MB

english, 2008

4

Illuminating Solution Responses of a LOV Domain Protein with Photocoupled Small-Angle X-Ray Scattering

Jessica S. Lamb, Brian D. Zoltowski, Suzette A. Pabit, Li Li, Brian R. Crane, Lois Pollack

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 507 KB

english, 2009

5

Effects of a Protecting Osmolyte on the Ion Atmosphere Surrounding DNA Duplexes

Blose, Joshua M., Pabit, Suzette A., Meisburger, Steve P., Li, Li, Jones, Christopher D., Pollack, Lois

Journal:

Year:

2011

Language:

english

File:

PDF, 465 KB

english, 2011

6

Laminar-Flow Fluid Mixer for Fast Fluorescence Kinetics Studies

Pabit, Suzette A., Hagen, Stephen J.

Journal:

Biophysical Journal

Year:

2002

Language:

english

File:

PDF, 362 KB

english, 2002

7

Internal Friction Controls the Speed of Protein Folding from a Compact Configuration †

Pabit, Suzette A., Roder, Heinrich, Hagen, Stephen J.

Journal:

Year:

2004

Language:

english

File:

PDF, 104 KB

english, 2004

8

Characterization of DNA and RNA Ion Atmospheres Using Multiple-Energy Asaxs

Pabit, Suzette A., Meisburger, Steve P., Li, Li, Blose, Joshua M., Jones, Christopher D., Pollack, Lois

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 37 KB

english, 2011

9

Comparing Double-Strand DNA and RNA Condensation

Li, Li, Pabit, Suzette, Meisburger, Steve, Pollack, Lois

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 37 KB

english, 2011

10

The Influence of Osmolytes on Electrostatic Interactions Among DNA Duplexes

Blose, Joshua M., Pabit, Suzette A., Meisburger, Steve P., Li, Li, Jones, Christopher D., Pollack, Lois

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 37 KB

english, 2011

11

RNA and Its Ionic Cloud: Solution Scattering Experiments and Atomically Detailed Simulations

Kirmizialtin, Serdal, Pabit, Suzette A., Meisburger, Steve P., Pollack, Lois, Elber, Ron

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 768 KB

english, 2012

12

Mono- and Trivalent Ions around DNA: A Small-Angle Scattering Study of Competition and Interactions

Andresen, Kurt, Qiu, Xiangyun, Pabit, Suzette A., Lamb, Jessica S., Park, Hye Yoon, Kwok, Lisa W., Pollack, Lois

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 434 KB

english, 2008

13

Closing The Lid On Dna End-to-end Stacking Interactions

Li, Li, Pabit, Suzette, Lamb, Jessica, Park, Hye Yoon, Pollack, Lois

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 39 KB

english, 2009

14

The Role of Helix Topology and Counterion Distributions in RNA Interactions

Pabit, Suzette A., Li, Li, Meisburger, Steve P., Lamb, Jessica S., Qiu, Xiangyun, Pollack, Lois

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 40 KB

english, 2010

15

Measuring the Dimensions of a Compact Kinetic Intermediate in the Folding Pathway of the GlmS Ribozyme

Meisburger, Steve, Brooks, Krista, Pabit, Suzette, Li, Li, Blose, Joshua, Hampel, Ken, Pollack, Lois

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 35 KB

english, 2011

16

Comparing Short dsRNA and dsDNA: Charge Screening Efficiency and Counterion Distribution

Pabit, Suzette A., Qiu, Xiangyun, Lamb, Jessica S., Li, Li, Pollack, Lois

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 36 KB

english, 2009

17

Sub-Millisecond RNA Collapse Observed in a Microfluidic Mixer

Pabit, Suzette A., Sutton, Julie L., Chen, Huimin, Zipfel, Warren R., Webb, Watt W., Pollack, Lois

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 36 KB

english, 2012

18

Solution Structures of Flexible RNA Molecules in Mono- and Divalent Salt

Meisburger, Steve, Chen, Huimin, Pabit, Suzette A., Sutton, Julie L., Webb, Watt W., Pollack, Lois

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 37 KB

english, 2012

19

Temperature-Dependent Single-Molecule Fluorescence Measurements of RNA Motifs Melting

Chen, Huimin, Pabit, Suzette A., Pollack, Lois, Webb, Watt W.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 40 KB

english, 2010

20

The Role of Ionic Strength and Ion Valence in RNA Collapse and Folding

Pabit, Suzette A., Sutton, Julie L., Chen, Huimin, Meisburger, Steve P., Pollack, Lois

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 38 KB

english, 2013

21

Time-Resolved Dimerization of a PAS-LOV Protein Measured with Photocoupled Small Angle X-ray Scattering

Lamb, Jessica S., Zoltowski, Brian D., Pabit, Suzette A., Crane, Brian R., Pollack, Lois

Journal:

Journal of the American Chemical Society

Year:

2008

Language:

english

File:

PDF, 445 KB

english, 2008

22

Role of Ion Valence in the Submillisecond Collapse and Folding of a Small RNA Domain

Pabit, Suzette A., Sutton, Julie L., Chen, Huimin, Pollack, Lois

Journal:

Year:

2013

Language:

english

File:

PDF, 2.08 MB

english, 2013

23

Counting Ions around DNA with Anomalous Small-Angle X-ray Scattering

Pabit, Suzette A., Meisburger, Steve P., Li, Li, Blose, Joshua M., Jones, Christopher D., Pollack, Lois

Journal:

Journal of the American Chemical Society

Year:

2010

Language:

english

File:

PDF, 244 KB

english, 2010

24

[Methods in Enzymology] Biophysical, Chemical, and Functional Probes of RNA Structure, Interactions and Folding: Part B Volume 469 || Using Anomalous Small Angle X-Ray Scattering to Probe the Ion Atmosphere Around Nucleic Acids

Pabit, Suzette A.

Year:

2009

Language:

english

File:

PDF, 713 KB

english, 2009

25

Smaller and Faster: The 20-Residue Trp-Cage Protein Folds in 4 μs

Qiu, Linlin, Pabit, Suzette A., Roitberg, Adrian E., Hagen, Stephen J.

Journal:

Journal of the American Chemical Society

Year:

2002

Language:

english

File:

PDF, 68 KB

english, 2002

26

Polyelectrolyte properties of single stranded DNA measured using SAXS and single molecule FRET: Beyond the wormlike chain model

Meisburger, Steve P., Sutton, Julie L., Chen, Huimin, Pabit, Suzette A., Kirmizialtin, Serdal, Elber, Ron, Pollack, Lois

Journal:

Year:

2013

Language:

english

File:

PDF, 1008 KB

english, 2013

27

Closing the lid on DNA end-to-end stacking interactions

Li, Li, Pabit, Suzette A., Lamb, Jessica S., Park, Hye Yoon, Pollack, Lois

Journal:

Applied Physics Letters

Year:

2008

Language:

english

File:

PDF, 522 KB

english, 2008

28

Accurate small and wide angle x-ray scattering profiles from atomic models of proteins and nucleic acids

Nguyen, Hung T., Pabit, Suzette A., Meisburger, Steve P., Pollack, Lois, Case, David A.

Journal:

The Journal of Chemical Physics

Year:

2014

Language:

english

File:

PDF, 1.34 MB

english, 2014

29

Asymmetric Nucleosome Disassembly with Disrupted Histones Revealed by Time Resolved Small Angle X-Ray Scattering with Contrast Variation

Chen, Yujie, Tokuda, Joshua M., Topping, Traci, Sutton, Julie L., Meisburger, Steve P., Pabit, Suzette A., Gloss, Lisa M., Pollack, Lois

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 39 KB

english, 2015

30

Revealing transient structures of nucleosomes as DNA unwinds

Chen, Y., Tokuda, J. M., Topping, T., Sutton, J. L., Meisburger, S. P., Pabit, S. A., Gloss, L. M., Pollack, L.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 4.17 MB

english, 2014

31

Both helix topology and counterion distribution contribute to the more effective charge screening in dsRNA compared with dsDNA

Pabit, S. A., Qiu, X., Lamb, J. S., Li, L., Meisburger, S. P., Pollack, L.

Journal:

Nucleic Acids Research

Year:

2009

Language:

english

File:

PDF, 673 KB

english, 2009

32

Why double-stranded RNA resists condensation

Tolokh, I. S., Pabit, S. A., Katz, A. M., Chen, Y., Drozdetski, A., Baker, N., Pollack, L., Onufriev, A. V.

Journal:

Nucleic Acids Research

Year:

2014

Language:

english

File:

PDF, 2.45 MB

english, 2014

33

Recognition of polyadenosine RNA by zinc finger proteins

Kelly, S. M., Pabit, S. A., Kitchen, C. M., Guo, P., Marfatia, K. A., Murphy, T. J., Corbett, A. H., Berland, K. M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2007

Language:

english

File:

PDF, 867 KB

english, 2007

34

Determining the Locations of Ions and Water around DNA from X-Ray Scattering Measurements

Meisburger, Steve P., Pabit, Suzette A., Pollack, Lois

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 928 KB

english, 2015

35

Diffusional limits to the speed of protein folding: fact or friction?

Hagen, Stephen J, Qiu, Linlin, Pabit, Suzette A

Journal:

Journal of Physics Condensed Matter

Year:

2005

Language:

english

File:

PDF, 528 KB

english, 2005

36

The Role of Correlation and Solvation in Ion Interactions with B-DNA

Sushko, Maria L., Thomas, Dennis G., Pabit, Suzette A., Pollack, Lois, Onufriev, Alexey V., Baker, Nathan A.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 988 KB

english, 2016

37

Condensation of Nucleic Acids by Multivalent Ions: Sequence Dependence and the Curious Case of RNA

Tolokh, Igor S., Drozdetski, Aleksander, Pabit, Suzette A., Katz, Andrea M., Pollack, Lois, Baker, Nathan A., Onufriev, Alexey V.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 39 KB

english, 2016

38

Exploring RNA Condensation

Pabit, Suzette A., Katz, Andrea M., Pollack, Lois

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 41 KB

english, 2015

39

Protein–DNA and ion–DNA interactions revealed through contrast variation SAXS

Tokuda, Joshua M., Pabit, Suzette A., Pollack, Lois

Journal:

Biophysical Reviews

Year:

2016

Language:

english

File:

PDF, 1.05 MB

english, 2016

40

Asymmetric unwrapping of nucleosomal DNA propagates asymmetric opening and dissociation of the histone core

Chen, Yujie, Tokuda, Joshua M., Topping, Traci, Meisburger, Steve P., Pabit, Suzette A., Gloss, Lisa M., Pollack, Lois

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.31 MB

english, 2017

41

Extracting water and ion distributions from solution x-ray scattering experiments

Nguyen, Hung T., Pabit, Suzette A., Pollack, Lois, Case, David A.

Journal:

The Journal of Chemical Physics

Year:

2016

Language:

english

File:

PDF, 678 KB

english, 2016

42

Spermine Condenses DNA, but Not RNA Duplexes

Katz, Andrea M., Tolokh, Igor S., Pabit, Suzette A., Baker, Nathan, Onufriev, Alexey V., Pollack, Lois

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 1.27 MB

english, 2017

43

Asymmetric DNA Unwrapping Drives Sequential Dimer Release in Nucleosomes

Chen, Yujie, Tokuda, Joshua, Topping, Traci, Meisburger, Steve, Pabit, Suzette, Gloss, Lisa, Pollack, Lois

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 60 KB

english, 2017

44

Probing Manganese Ion Distributions Around Nucleic Acids using Small Angle X-Ray Scattering

Pabit, Suzette A., Tokuda, Joshua M., Calvey, George D., Katz, Andrea M., Chen, Yujie, Pollack, Lois

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 62 KB

english, 2017

45

Using WAXS to Study RNA Conformations

Chen, Yen-Lin, Pabit, Suzette A., Katz, Andrea M., Pollack, Lois

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 43 KB

english, 2017

46

Understanding nucleic acid structural changes by comparing wide-angle x-ray scattering (WAXS) experiments to molecular dynamics simulations

Pabit, Suzette A., Katz, Andrea M., Tolokh, Igor S., Drozdetski, Aleksander, Baker, Nathan, Onufriev, Alexey V., Pollack, Lois

Journal:

The Journal of Chemical Physics

Year:

2016

Language:

english

File:

PDF, 2.32 MB

english, 2016

47

Divalent ions tune the kinetics of a bacterial GTPase Center rRNA folding transition from secondary to tertiary structure

Welty, Robb, Pabit, Suzette A, Katz, Andrea M, Calvey, George D, Pollack, Lois, Hall, Kathleen B

Journal:

Year:

2018

Language:

english

File:

PDF, 772 KB

english, 2018

48

Time-Resolved Contrast Variation SAXS for Studying RNA-Protein Interactions

Pabit, Suzette A., Katz, Andrea M., Calvey, George D., Pollack, Lois

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 68 KB

english, 2019

49

Probing Mg2+-Mediated RNA-RNA Interactions in the Presence of Metabolites

Lin, Derrick R., Pabit, Suzette A., Pollack, Lois

Journal:

Biophysical Journal

Year:

2020

File:

PDF, 41 KB

2020

50

Evidence that Primary Microrna Bends in the Presence of DGCR8 Seen using Both Saxs and FRET Measurements

Pabit, Suzette A., Chen, Yen-Lin, Usher, Grace A., Cook, Erik C., Pollack, Lois, Showalter, Scott A.

Journal:

Biophysical Journal

Year:

2020

File:

PDF, 36 KB

2020